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ClaiRO
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A.J. Sethi
ClaiRO
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e88698ee
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e88698ee
authored
Oct 18, 2020
by
A.J. Sethi
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@@ -8,11 +8,11 @@ ClaiRO is a low-bias method to detect and quantify exon-defining units from pair
ClaiRO relies on several packages. Please ensure these are available within your PATH.
*
Bedtools (Quinlan, 2014)
*
Samtools (Li et al., 2009)
*
Picard (Broad Institute, 2019)
*
Subread FeatureCounts (Liao and Shi, 2019)
*
GNU Parallel (Tange, 2018)
*
Bedtools
2.29.2+
(Quinlan, 2014)
*
Samtools
1.11.1+
(Li et al., 2009)
*
Picard
2.23+
(Broad Institute, 2019)
*
Subread FeatureCounts
2.0.1
(Liao and Shi, 2019)
*
GNU Parallel
20191122+
(Tange, 2018)
# Installation
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@@ -21,6 +21,8 @@ To clone into the repository, use the following command:
`$ git clone --recursive https://git.nci.org.au/as7425/ClaiRO.git`
ClaiRO runs on unix-like environments.
# Usage
to be confirmed
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